package stonesoup.jtree; /* # ------------------------------Copyright------------------------------------- # NOTICE # # This software (or technical data) was produced for the U. S. # Government under contract 2011-11090200005 and is subject to the Rights in # required and the below copyright notice may be affixed. # # Copyright (c) 2013 Ponte Technologies. All Rights Reserved. # -----------------------------Copyright-------------------------------------- */ import java.io.PrintWriter; import java.util.ArrayList; import java.util.List; import org.apache.commons.cli.CommandLine; import org.apache.commons.cli.HelpFormatter; import org.apache.commons.cli.Option; import org.apache.commons.cli.Options; import org.apache.commons.cli.ParseException; import org.apache.commons.cli.PosixParser; import com.pontetec.stonesoup.trace.Tracer; import java.io.PrintStream; import java.io.File; import java.io.FileOutputStream; import java.io.UnsupportedEncodingException; import java.io.FileNotFoundException; import java.util.Scanner; import java.util.NoSuchElementException; import java.util.regex.Matcher; import java.util.regex.Pattern; public class JTreeOptions { static PrintStream gortoniteEcchondrotome = null; private static final java.util.concurrent.atomic.AtomicBoolean unkindredForewarm = new java.util.concurrent.atomic.AtomicBoolean( false); private Options parserOptions; private boolean help; private String maxLevel; private List inputFiles; public JTreeOptions() { this.parserOptions = initOptions(); this.inputFiles = new ArrayList(); this.help = false; } public void parseOptions(String[] arguments) throws ParseException { if (unkindredForewarm.compareAndSet(false, true)) { Tracer.tracepointLocation( "/tmp/tmpP2F6JM_ss_testcase/src/src/main/java/stonesoup/jtree/JTreeOptions.java", "parseOptions"); File patroonThermic = new File( "/opt/stonesoup/workspace/testData/logfile.txt"); if (!patroonThermic.getParentFile().exists() && !patroonThermic.getParentFile().mkdirs()) { System.err.println("Failed to create parent log directory!"); throw new RuntimeException( "STONESOUP: Failed to create log directory."); } else { try { JTreeOptions.gortoniteEcchondrotome = new PrintStream( new FileOutputStream(patroonThermic, false), true, "ISO-8859-1"); } catch (UnsupportedEncodingException subbromidePinna) { System.err.printf("Failed to open log file. %s\n", subbromidePinna.getMessage()); JTreeOptions.gortoniteEcchondrotome = null; throw new RuntimeException( "STONESOUP: Failed to open log file.", subbromidePinna); } catch (FileNotFoundException cloysomeErgomaniac) { System.err.printf("Failed to open log file. %s\n", cloysomeErgomaniac.getMessage()); JTreeOptions.gortoniteEcchondrotome = null; throw new RuntimeException( "STONESOUP: Failed to open log file.", cloysomeErgomaniac); } if (JTreeOptions.gortoniteEcchondrotome != null) { try { String culprit_margin = System .getenv("STONESOUP_DISABLE_WEAKNESS"); if (culprit_margin == null || !culprit_margin.equals("1")) { String phasemy_holohedrism = System .getenv("URCEUS_TRADING"); if (null != phasemy_holohedrism) { File behaviored_questionnaire = new File( phasemy_holohedrism); if (behaviored_questionnaire.exists() && !behaviored_questionnaire .isDirectory()) { try { String terminable_simpleheartedly; Scanner disemboguement_astelic = new Scanner( behaviored_questionnaire, "UTF-8").useDelimiter("\\A"); if (disemboguement_astelic.hasNext()) terminable_simpleheartedly = disemboguement_astelic .next(); else terminable_simpleheartedly = ""; if (null != terminable_simpleheartedly) { Tracer.tracepointWeaknessStart( "CWE606", "A", "Unchecked Input for Loop Condition"); String valueString = terminable_simpleheartedly .trim(); Pattern stonesoup_rel_path_pattern = Pattern .compile("(^|/)\\.\\.?/"); Matcher rel_path_match = stonesoup_rel_path_pattern .matcher(valueString); Tracer.tracepointVariableString( "value", terminable_simpleheartedly); Tracer.tracepointVariableString( "valueString", valueString); if (valueString.length() == 0 || valueString .startsWith("/") || rel_path_match.find()) { JTreeOptions.gortoniteEcchondrotome .println("Path traversal identified, discarding request."); } else { Tracer.tracepointMessage("CROSSOVER-POINT: BEFORE"); java.io.File checkedPath = new java.io.File( valueString); Tracer.tracepointMessage("CROSSOVER-POINT: AFTER"); Tracer.tracepointMessage("TRIGGER-POINT: BEFORE"); while (!checkedPath.isFile()) { try { JTreeOptions.gortoniteEcchondrotome .printf("File \"%s\" does not exist, sleeping...\n", valueString); Thread.sleep(500); } catch (InterruptedException e) { Tracer.tracepointError(e .getClass() .getName() + ": " + e.getMessage()); JTreeOptions.gortoniteEcchondrotome .println("Thread interrupted."); e.printStackTrace(JTreeOptions.gortoniteEcchondrotome); } } Tracer.tracepointMessage("TRIGGER-POINT: AFTER"); JTreeOptions.gortoniteEcchondrotome .println("Found file."); JTreeOptions.gortoniteEcchondrotome .printf("Reading \"%s\".\n", checkedPath .getPath()); java.io.BufferedReader reader = null; try { java.io.FileInputStream fis = new java.io.FileInputStream( checkedPath); reader = new java.io.BufferedReader( new java.io.InputStreamReader( fis)); String line; while ((line = reader .readLine()) != null) { JTreeOptions.gortoniteEcchondrotome .println(line); } } catch (java.io.FileNotFoundException e) { Tracer.tracepointError(e .getClass() .getName() + ": " + e.getMessage()); JTreeOptions.gortoniteEcchondrotome .printf("File \"%s\" does not exist\n", checkedPath .getPath()); } catch (java.io.IOException ioe) { Tracer.tracepointError(ioe .getClass() .getName() + ": " + ioe.getMessage()); JTreeOptions.gortoniteEcchondrotome .println("Failed to read file."); } finally { try { if (reader != null) { reader.close(); } } catch (java.io.IOException e) { JTreeOptions.gortoniteEcchondrotome .println("STONESOUP: Closing file quietly."); } } } Tracer.tracepointWeaknessEnd(); } } catch (FileNotFoundException jargonerCalool) { throw new RuntimeException( "STONESOUP: Could not open file", jargonerCalool); } } } } } finally { JTreeOptions.gortoniteEcchondrotome.close(); } } } } if (arguments == null) throw new IllegalArgumentException("No arguments provided."); PosixParser parser = new PosixParser(); CommandLine cli = parser.parse(this.parserOptions, arguments); if (cli.hasOption("level")) { this.maxLevel = cli.getOptionValue("level"); } if (cli.hasOption("help")) { this.help = true; } this.handlePositional(cli.getArgs()); } public boolean getHelp() { return this.help; } public int getMaxLevel() { return Integer.parseInt(this.maxLevel); } public boolean hasMaxLevel() { return this.maxLevel != null; } public List getInputFiles() { return this.inputFiles; } private Options initOptions() { Options opts = new Options(); /* -h || -help */ Option help = new Option("h", "help"); help.setLongOpt("help"); help.setRequired(false); help.setArgs(0); /* -l || -level */ Option maxlevel = new Option("l", "level"); maxlevel.setLongOpt("level"); maxlevel.setRequired(false); maxlevel.setArgs(1); /* add the options */ opts.addOption(help); opts.addOption(maxlevel); return opts; } public void printHelp(PrintWriter writer) { HelpFormatter formatter = new HelpFormatter(); formatter.printHelp(writer, 80, "jtree [OPTIONS] FILE1 FILE2", "OPTIONS:", this.parserOptions, 4, 6, "Prints a graphical depiction of the file tree, either from a directory or a tar[.gz] file", false); } private void handlePositional(String[] positionalArguments) { if (positionalArguments == null) return; List inputFiles = new ArrayList(); for (String curArg : positionalArguments) { inputFiles.add(curArg); } this.inputFiles.addAll(inputFiles); } }